Version History

4.0.2

  • Fix test_estimateZernikesCwfsTask call to ButlerQuantumContext.

4.0.1

  • Remove Gen2 daf_persistence from UPS table.

4.0.0

  • Add masked deblending to CompensableImage and pipeline tasks.

  • Change how DonutSourceSelectorTask works by adding minBlendedSeparation parameter and changing DonutRadius to unblendedSeparation parameter.

3.2.0

  • Port Latiss functionality from EstimateZernikesLatissTask into CutOutDonutsScienceSensorTask + CalcZernikesTask pipeline.

  • Deprecate EstimateZernikes family of tasks. These tasks will no longer be updated and will be removed after January 2023.

3.1.5

  • Throw exception when auxTel is trying to use offAxis model.

3.1.4

  • Remove imageCoCenter step from Algorithm.

  • Add DeprecationWarning that imageCoCenter function in CompensableImage will be removed after January 2023.

3.1.3

  • Added default value to DonutStamp for DFC_DIST to allow the butler to read DonutStamp from repositories created with older versions of ts_wep.

3.1.2

  • Update phosimOutput corner sensors test files.

3.1.1

  • Fix tests pipeline yaml files updating the ISR setting to use ‘MEDIAN’ for overscan fit type.

  • Remove obsolete _generateTestExposures.

  • Fix test_generateDonutDirectDetectTask.py

3.1.0

  • Added a history to the Algorithm class that stores intermediate products of the algorithm (see Algorithm.getHistory()).

  • Fixed the algorithm so that it is once again symmetric with respect to I1 and I2. This involved simplifying the way that mask and image orientation are handled for the extrafocal image (see below).

  • Added the option to create masks in the orientation of the original images by setting compensated=False in CompensableImage.makeMask().

3.0.1

  • Fix test_generateDonutCatalogWcsTask.py to work with more recent versions of the DM stack.

3.0.0

  • Refactor tasks to directly accept instrument parameters in their configuration.

2.7.0

  • Remove dictionary defining allowable offsets in Instrument.py and replace with settable parameter.

  • Allow Instrument.py to be configured directly from dictionary of instrument parameters in addition to policy file.

2.6.0

  • Replace getters and setters in Instrument.py with properties to make more pythonic.

  • Update Algorithm, CompensableImage and DonutTemplateModel with new Instrument.py design.

2.5.8

  • Change focusZ in headers of repackaged phosim data to be in mm instead of microns after phosim_utils update.

2.5.7

  • Add defocal distance into DonutStamp.

2.5.6

  • Fix task input order in test_estimateZernikes… tests.

2.5.5

  • Change default maxFieldDistance in DonutSourceSelectorTask.py to 1.813 degrees based upon results from DM-33180.

  • Fix test in test_calcZernikesTaskScienceSensor to use correct intraFocal dataId.

2.5.4

  • Update science sensor and LATISS tasks to get focusZ from exposure visitInfo instead of metadata after update in DM-35186.

2.5.3

  • Update tests and gen3TestRepo to work with latest version of the stack (w_2022_28).

2.5.2

  • Add ComCam to donutTemplateModel.

  • Add error message to donutTemplateModel for AuxTel if not run with ‘onAxis’ optical model.

2.5.1

  • Correct orientation of masks in pipeline tasks.

2.5.0

  • Update names of cMask to mask_comp (padded), pMask to mask_pupil (non-padded)

  • Correct output of getPaddedMask to mask_comp, getNonPaddedMask to mask_pupil

2.4.4

  • Added documentation link to the README.

2.4.3

  • Fix online documentation build errors.

2.4.2

  • Remove matplotlib backend switching in PlotUtil.py

2.4.1

  • Add information on Jupyter Notebooks in ts_analysis_notebooks to README.

2.4.0

  • Add CutOutDonuts tasks and CalcZernikesTask to separate cutting out donut stamps and calculating Zernikes from donut stamps as separate tasks.

2.3.8

  • Remove phosim_utils dependency.

2.3.7

  • Optimize CWFS algorithms.

2.3.6

  • Fix rotation of sensors in EstimateZernikesBase.

2.3.5

  • Update scipy.ndimage namespace to fix deprecation warnings.

  • Run black v22.3.

2.3.4

  • Fix test for EstimateZernikesLatissTask, to run for any user with /repo/main/ access.

2.3.3

  • Add donut location configuration setting to DonutSourceSelectorTask.

2.3.2

  • Change CombineZernikesSigmaClip to use the more robust mad_std standard deviation algorithm.

  • Add maxZernClip configuration parameter to CombineZernikesSigmaClip.

  • Change CombineZernikes metadata to use integer flags.

2.3.1

  • Rely on GalSim for Zernike and Cartesian polynomial evaluation.

2.3.0

  • Add EstimateZernikesLatissTask to process auxTel data

  • Add GenerateDonutDirectDetectTask to find donuts with template fitting

  • Add choices for binary image creation in DonutDetector

  • Add getCamType and getDefocalDisInMm to Utility

  • Add donut template for auxTel in DonutTemplateModel

2.2.4

  • Update Jenkinsfile to always pull the image before new builds and improve cleanup stages to make build more robust.

2.2.3

  • Change EstimateZernikesCwfsTask to be able to accept only a single pair of wavefront sensors.

  • Remove runQuantum function from EstimateZernikesScienceSensorTask since it does not add any functionality now that the task gets the camera from the butler.

2.2.2

  • Update functions marked deprecated as of stack version w_2022_06.

2.2.1

  • Distinguish AuxTel ZWO camera from LATISS

2.2.0

  • Add CombineZernikes…Tasks that combine the Zernike coefficients from multiple donut pairs into a single set of coefficients.

2.1.4

  • Remove timeMethod deprecation warnings and use static calibration camera.

2.1.3

  • Fix maxBlended parameter in DonutSourceSelectorTask and improve tests to check this configuration setting.

2.1.2

  • Make sure catalogs from GenerateDonutCatalog…Tasks have same columns.

2.1.1

  • Get camera from the butler when running pipeline tasks.

2.1.0

  • Refactor GenerateDonutCatalog*.py tasks.

  • Update EstimateZernikes…Tasks after DonutCatalog refactor.

2.0.4

  • Add DonutSourceSelectorTask to task module.

2.0.3

  • Add RefCatalogInterface to task module.

2.0.2

  • Patch to work with weekly w_2022_2:

    • loadSkyCircle no longer returns centroid column, use loadPixelBox instead.

2.0.1

  • Patch to work with latest weekly.

  • Update Jenkinsfile for CI job:

    • git command is no longer working after the latest update on our Jenkins server.

    • update path to plantuml.

2.0.0

  • Removed code not used in Gen3 Pipelines.

1.8.2

  • Removed CreatePhosimDonutTemplates.py and moved to ts_phosim.

1.8.1

  • Get sensor orientation and field position directly from camera through new DonutStamp objects instead of using SourceProcessor.

  • Fix rotation of postage stamps sent to WFEsti.

1.8.0

  • Refactored DonutStamp.py and added ability to recreate masks as afwImage.Mask objects.

1.7.10

  • Save outputZernikes for pairs of wavefront detectors not just a single output for all detectors.

1.7.9

  • Remove _shiftCenterWfs from Source Processor.

1.7.8

  • Update stamp rotations to work with CWFS.

1.7.7

  • Update focalplanelayout.txt with new Euler angle for SW0 sensors.

1.7.6

  • Update donutStamp with archive property.

  • Add LSSTCam/calib to collections path in test Gen3 pipelines.

1.7.5

  • Break generic pieces of GenerateDonutCatalogOnlineTask.py into GenerateDonutCatalogOnlineBase.py

  • Add GenerateDonutCatalogWcsTask.py to calculate donut catalogs when WCS is available

1.7.4

  • Remove old e-image corner wavefront sensor files.

  • Add updated corner wavefront sensor test data.

  • Add CWFS Zernikes code and tests.

1.7.3

  • Break generic pieces of EstimateZernikesFamTask.py into EstimateZernikesBase.py

1.7.2

  • Fix append and extend methods in DonutStamps.py.

  • Update tests in test_donutStamps.py to properly check append and extend methods.

1.7.1

  • Update FOCUSZ parameter in test data.

1.7.0

  • Replace WcsSol by DM’s wcs code in GenerateDonutCatalogOnlineTask.

  • Fix intra/extra zernike selection.

1.6.9

  • Add focusz as an argument to repackagePhosimImages in CreatePhosimDonutTemplates.py

1.6.8

  • Return both raw and averaged Zernikes to Butler repository in EstimateZernikesFamTask.py.

1.6.7

  • Fix flake error and update Jenkinsfile

1.6.6

  • Remove 90 degree offset from WcsSol.py now that phosim headers are updated.

1.6.5

  • Use FOCUSZ header information in EstimateZernikesFamTask.py.

1.6.4

  • Add EstimateZernikesFamTask.py to calculate Zernike coefficients in full-array mode through a Gen 3 pipeline.

1.6.3

  • Add DonutStamp and DonutStamps storage classes to hold postage stamps of donuts.

1.6.2

  • Update ROTANG header in realComcam test files

1.6.1

  • Update GenerateDonutCatalogOnlineTask.py to get instrument directly from pipeline configuration.

  • Setup ctrl_mpexec package in Jenkinsfile so tests can run pipetask command.

1.6.0

  • Create new task module

  • Add GenerateDonutCatalogOnlineTask.py in task module

  • Add tests/testData/gen3TestRepo as sample Gen 3 repo for testing

1.5.9

  • Build and upload documentation as part of the CI job.

  • Use develop-env image for the CI job, due to the need of java to build the documentation.

  • Disable concurrent builds.

  • Fix docstring in SourceSelector.connect method.

1.5.8

  • Reformat the code by black v20.8b1.

1.5.7

  • Update import of DetectorType.

1.5.6

  • Reformat code with black.

1.5.5

1.5.4

  • Update to using LsstCamMapper and new geometry, including focalplanelayout.txt

1.5.3

  • Add DonutTemplatePhosim class.

  • Add CreatePhosimDonutTemplates class and add bin.src/runCreatePhosimDonutTemplates.py

1.5.2

  • Fix the ZernikeMaskedFit() when passing masked data

1.5.1

  • Add donut template classes to make templates for CentroidConvolveTemplate.

  • Add DonutTemplateFactory, DonutTemplateDefault, and DonutTemplateModel.

1.5.0

  • Add CentroidConvolveTemplate as a new centroid finding method.

1.4.9

  • Unify the line ending to LF.

1.4.8

  • Remove the abbrevDectectorName() and expandDetectorName().

  • Remove the unused arguments of epoch, includeDistortion, and mjd in WCS related functions.

  • Fix the calcWfErr() for the LsstCamMapper.

1.4.7

  • Remove sims and obs_lsstSim dependencies.

  • Update WCS code to use obs_lsst.

1.4.6

  • Use the sims_w_2020_38.

1.4.5

  • Use the sims_w_2020_36.

  • Support the LSST full-array mode (FAM). Add the classes of BaseCwfsTestCase and BaseBscTestCase.

  • Put the limits of star’s magnitude into a configuration file.

  • Remove the serialization functions in FilterType enum.

1.4.4

  • Use the pybind11 instead of cython.

  • Add the clang-format check to .githooks.

1.4.3

  • Reformat the code by black.

  • Add the black check to .githooks.

  • Ignore flake8 check of E203 ans W503 for the black.

  • Use the sims_w_2020_21.

1.4.2

  • Improved handling of IO errors - catch more OS Errors instead of only file not exists.

1.4.1

  • Add the function to recenter the donut image with the template.

  • Add the instrument and test data of auxilirary telescope.

1.4.0

  • Use the sims_w_2020_15.

  • Use the factory pattern for deblend module.

1.3.9

  • Use the sims_w_2020_14.

1.3.8

  • Use the sims_w_2020_07.

1.3.7

  • Use the sims_w_2020_06.

  • Skip two tests in test_butlerWrapper.py and test_camIsrWrapper.py for the bugs in upstream.

  • Feedback to DM team.

1.3.6

  • Use the sims_w_2020_04.

1.3.5

  • Use the sims_w_2019_50.

1.3.4

  • Use the sims_w_2019_38.

1.3.3

  • Use the sims_w_2019_31.

  • Remove the conda package installation in Jenkinsfile.

  • Update the permission of workspace after the unit test.

1.3.2

  • Use the sims_w_2019_29.

  • Add the unit tests of cwfs module to check the outputs of cython related code.

  • Move the plotImage() from Tool.py to PlotUtil.py.

  • Install the ipython in Jenkinsfile to make the test environment to be consistent with the development.

1.3.1

  • Use the factory pattern for centroid find algorithms.

  • Move the SensorWavefrontError class of ts_ofc to here.

1.3.0

  • Use sims_w_2019_24.

  • Support the eimage.

  • Enable to update and save the setting file.

1.2.9

  • Use sims_w_2019_22.

  • Adapt the new version of ip_isr that fixes the bug that can not do the ISR continuously.

1.2.8

  • Use sims_w_2019_20.

1.2.7

  • Put the default BSC path and sky file path in default yaml file.

  • Concrete WEPCalculation class will connect and disconnect the database at each query.

  • Use sims_w_2019_18.

1.2.6

  • Utilize the interface classes to main telescope active optics system (MTAOS).

  • Use sims_w_2019_17.

1.2.5

  • Support the documenteer.

1.2.4

  • Use the yaml format for configuration files of cwfs module.

  • Use sims_w_2019_15.

1.2.3

  • Add the eups as the package manager.

  • Use sims_w_2019_12.

1.2.2

  • Add the RawExpData class and update the related functions.

1.2.1

  • Add the interface to MTAOS in ctrlIntf module.

1.1.1

  • Updated to use the scientific pipeline of sims_w_2019_02.

  • Add the referece filter type.

1.1.0

  • Updated the WEP to use the obs_lsst and scientific pipeline of sims_w_2018_47.

  • The phosim_utils is used to repackage the PhoSim output amplifer images to the format of multi-extention FITS.

1.0.1

  • Updated the WEP to use the obs_lsst and scientific pipeline of sims_w_2018_47.

  • The phosim_utils is used to repackage the PhoSim output amplifer images to the format of multi-extention FITS.

1.0.0

  • Finished the WEP in totally ideal condition with the scientific pipeline v.14.